Genome-wide association study for feed efficiency traits using SNP and haplotype models1

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Genome-wide association study for feed efficiency traits using SNP and haplotype models.

Feed costs comprise the majority of variable expenses in beef cattle systems making feed efficiency an important economic consideration within the beef industry. Due to the expense of recording individual feed intake phenotypes, a genomic-enabled approach could be advantageous towards improving this economically relevant trait complex. A genome-wide association study (GWAS) was performed using ...

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Mapping quantitative trait loci through the use of linkage disequilibrium (LD) in populations of unrelated individuals provides a valuable approach for dissecting the genetic basis of complex traits in soybean (Glycine max). The haplotype-based genome-wide association study (GWAS) has now been proposed as a complementary approach to intensify benefits from LD, which enable to assess the genetic...

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Genome wide association study for feed efficiency traits in beef cattle using CNV

The purpose of this study was: (i) to validate and detect copy number variations (CNV) in the cattle genome, and (ii) to find associations between CNV and feed efficiency traits. Average daily gain and dry matter intake were obtained from 3,884 beef cattle. Animals were genotyped with the panels of 50,000 single nucleotide polymorphisms (SNP) or 770,000 SNP. The log R ratio (LRR) was used as an...

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Genome-wide association analysis for feed efficiency in Angus cattle

Estimated breeding values for average daily feed intake (AFI; kg/day), residual feed intake (RFI; kg/day) and average daily gain (ADG; kg/day) were generated using a mixed linear model incorporating genomic relationships for 698 Angus steers genotyped with the Illumina BovineSNP50 assay. Association analyses of estimated breeding values (EBVs) were performed for 41,028 single nucleotide polymor...

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Genome-wide Association Study to Identify Genes and Biological Pathways Associated with Type Traits in Cattle using Pathway Analysis

Extended Abstract Introduction and Objective: Type traits describing the skeletal characteristics of an animal are moderately to strongly genetically correlate with other economically important traits in cattle including fertility, longevity and carcass traits. The present study aimed to conduct a genome wide association studies (GWAS) based on gene-set enrichment analysis for identifying the ...

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ژورنال

عنوان ژورنال: Journal of Animal Science

سال: 2018

ISSN: 0021-8812,1525-3163

DOI: 10.1093/jas/sky119